You are viewing the site in preview mode
Skip to main content
|
Dataset
|
Parameters and statistics of the Bayesian analyses
|
Total number of generations run
|
|---|
|
Substitution models (Number of Unique site patterns)
|
Number of trees used in consensus
|
|---|
|
ITS
|
gapdh
|
tub2
|
act
|
chs-1
|
his3
|
ApMat
|
gs
|
|---|
|
acutatum complex
|
HKY + I (108)
|
SYM + G (151)
|
GTR + G (134)
|
GTR + G (86)
|
K80 + I (54)
|
GTR + G (96)
| | |
45,602
|
3,040,000
|
|
boninense complex
|
HKY + I (42)
|
HKY (130)
|
HKY + G (111)
|
HKY + G (94)
|
HKY + G (55)
| | | |
12,002
|
80,000
|
|
gloeosporioides complex, 2-gene
| | | | | | |
HKY + G (520)
|
GTR + G (432)
|
442,502
|
29,500,000
|
|
gloeosporioides complex, 5-gene
|
SYM + I (73)
|
HKY + G (163)
|
SYM + I (180)
|
HKY + I (85)
|
K80 + G (55)
| | | |
102,752
|
685,000
|
|
orchidearum complex
|
GTR + I (34)
|
HKY (55)
|
HKY (90)
|
HKY (42)
| | | | |
4128
|
275,000
|
| |
Statistics of the parsimony analyses
| |
| |
Number of strains (incl. Outgroup(s))
|
Number of included characters
|
Number of parsimony-informative characters
|
Number of parsimony-uninformative characters
|
Number of constant characters
|
Tree Length (TL)
|
Consistency index (CI)
|
Retention index (RI)
|
Rescaled consistency index (RC)
|
Number of equally most parsimonious trees saved
|
|
acutatum complex
|
100
|
2210
|
282
|
438
|
1490
|
1190
|
0.76
|
0.79
|
0.6
|
1000
|
|
boninense complex
|
24
|
1743
|
189
|
343
|
1211
|
776
|
0.87
|
0.79
|
0.68
|
3
|
|
gloeosporioides complex, 2-gene
|
92
|
1715
|
559
|
539
|
617
|
2003
|
0.73
|
0.88
|
0.64
|
161
|
|
gloeosporioides complex, 5-gene
|
85
|
1724
|
306
|
222
|
1196
|
926
|
0.71
|
0.857
|
0.610
|
1000
|
|
orchidearum complex
|
26
|
1417
|
72
|
282
|
1063
|
411
|
0.92
|
0.85
|
0.78
|
284
|
